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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BRCA rs11957744 chr5:147404358 A/G 5.44E-5 1024 22.02 18.35 20.87 KM Plot
BRCA rs11962869 chr6:170873571 G/C 8.05E-8 1028 11.23 20.53 21.8 KM Plot
BRCA rs11963450 chr6:20534974 T/C 4.33E-9 1023 21.5 21.77 8.87 KM Plot
BRCA rs11979508 chr7:130330758 C/A 2.96E-5 1025 22.4 19.93 17.93 KM Plot
BRCA rs12255938 chr10:70417547 G/A 4.85E-5 1018 23.53 19.1 14.93 KM Plot
BRCA rs12258424 chr10:8550675 G/T 2.97E-5 1028 21.27 22.67 24.18 KM Plot
BRCA rs12259509 chr10:70415612 T/C 5.12E-5 1015 23.48 19.1 14.93 KM Plot
BRCA rs12261368 chr10:70416343 T/A 5.12E-5 1015 23.48 19.1 14.93 KM Plot
BRCA rs12266293 chr10:70415515 A/G 5.12E-5 1015 23.48 19.1 14.93 KM Plot
BRCA rs12326221 chr18:44682893 G/T 5.04E-6 1025 21.7 22.2 18.23 KM Plot
BRCA rs12326412 chr18:44683594 A/C 5.05E-6 1027 21.7 21.67 18.23 KM Plot
BRCA rs12326457 chr18:44678425 A/G 5.05E-6 1027 21.7 21.67 18.23 KM Plot
BRCA rs12326465 chr18:44678645 A/G 5.05E-6 1027 21.7 21.67 18.23 KM Plot
BRCA rs12380266 chr9:37606701 C/G 2.68E-5 1028 20.47 27.87 19.3 KM Plot
BRCA rs12386076 chr18:44673340 T/C 6.58E-6 1027 21.77 21.58 18.13 KM Plot